PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00007.36
Common NameAMTR_s00007p00069060
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NF-X1
Protein Properties Length: 456aa    MW: 50079.1 Da    PI: 7.9732
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00007.36genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.62e-06191209120
                                 zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                                              CG H C  lCH+GpCppCp+
  evm_27.model.AmTr_v1.0_scaffold00007.36 191 CG-HECLLLCHPGPCPPCPR 209
                                              **.****************7 PP
2zf-NF-X116.42e-05243262120
                                 zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                                              CG H+Cq+ CH G C pC++
  evm_27.model.AmTr_v1.0_scaffold00007.36 243 CGLHQCQENCHNGSCTPCQK 262
                                              ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578505.53E-569112No hitNo description
PROSITE profilePS500898.56574146IPR001841Zinc finger, RING-type
PROSITE patternPS01359074145IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.0089191209IPR000967Zinc finger, NF-X1-type
PfamPF014220.0013191208IPR000967Zinc finger, NF-X1-type
CDDcd060087.72E-10233281No hitNo description
SMARTSM004380.024243262IPR000967Zinc finger, NF-X1-type
PfamPF014220.0014243260IPR000967Zinc finger, NF-X1-type
CDDcd060086.13E-9286333No hitNo description
PfamPF014225290313IPR000967Zinc finger, NF-X1-type
SMARTSM004380.028296315IPR000967Zinc finger, NF-X1-type
CDDcd060082.75E-9340389No hitNo description
SMARTSM004385.3350370IPR000967Zinc finger, NF-X1-type
PfamPF014220.027350369IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAFSTAHPLS SSSSSEDDDD SNYNGIRKPK LKASTMEDDP IFRPYLQIHG TSPSHSLSKI  60
QAFLLASRSG ALACLICLEK VRHSHPIWAC KLGCYAIFHL PCIQNWARQS SNLVVERAMV  120
RLSRDHFPEA AAFALENANW HCPKCRIEYP KILIPHTYVC YCGKLENPTP DPWIVSHSCG  180
EFCNLPLKGN CGHECLLLCH PGPCPPCPRL IESPCFCGSN LEVRRCSAKD FSCNKPCSKL  240
LACGLHQCQE NCHNGSCTPC QKKGIHQCMC GKVKEERACS DKIFRCENPC GRELDCKKHV  300
CSKGCHSGSC GVCELQGKMT CPCGNKEYKG IACDALVPSC GATCERMLNC GFHRCPERCH  360
HGPCVDTCRI VMTKSCRCGS LRKQASCCQE LFHAIKVWFV RENVKLNEIV GGMPVNGGVV  420
MGTVHPAQRY VTGSFDVETI NAPHAATEVL VLPAL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020522415.10.0NF-X1-type zinc finger protein NFXL2 isoform X2
SwissprotQ9FFK81e-128NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLW1PDV30.0W1PDV3_AMBTC; Uncharacterized protein
STRINGERN052250.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP63251718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-116sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]