PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00007.392
Common NameAMTR_s00007p00268460, LOC18433763
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 214aa    MW: 22791.1 Da    PI: 4.6235
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00007.392genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-183179355
                                       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                              +kGVr +k +g+WvAe+r p++   r r++lg+++ +e+Aa+a++aa  +l+g
  evm_27.model.AmTr_v1.0_scaffold00007.392 31 FKGVRMRK-WGKWVAEVRLPNS---RERIWLGSYDAPEKAARAYDAAVFCLRG 79
                                              8*****99.*******999833...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.64E-272989No hitNo description
SuperFamilySSF541717.19E-213088IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-293088IPR001471AP2/ERF domain
PROSITE profilePS5103221.6943087IPR001471AP2/ERF domain
SMARTSM003806.1E-343093IPR001471AP2/ERF domain
PRINTSPR003674.2E-83142IPR001471AP2/ERF domain
PfamPF008479.7E-123179IPR001471AP2/ERF domain
PRINTSPR003674.2E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVRPSSSSGT RTRPGRRENS SSDSGGSGQI FKGVRMRKWG KWVAEVRLPN SRERIWLGSY  60
DAPEKAARAY DAAVFCLRGP SAKLNFPANP PEISAAGSLS PAQIQLVAAR FAHEGPPPTS  120
GATSDSPGMS GPERQEPSEG NTSEHSEPLP PPPPPIDWPL MDEFLPESNG GGVFHPSLEG  180
FTVGNFIPTE EEEEAPEAGD AGYYEAPTGL WTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-142387272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843906.11e-152ethylene-responsive transcription factor ERF017
TrEMBLW1PD791e-150W1PD79_AMBTC; Uncharacterized protein
STRINGERN055811e-151(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-41ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]