PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00008.115
Common NameAMTR_s00008p00198780, LOC18423285
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 258aa    MW: 29462.7 Da    PI: 6.874
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00008.115genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-1477128155
                                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               +r++h ++Er+RR+++N+ ++ Lr+l+P++   + +K + a+i+  A++++k+L+
  evm_27.model.AmTr_v1.0_scaffold00008.115  77 QRMTHIAIERNRRKQMNEYLSVLRSLMPES---YIQKGDQASIVGGAIDFVKELE 128
                                               79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.7E-1575132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1775142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-1375132No hitNo description
PROSITE profilePS5088815.95576127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-1277128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1182133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.98E-5177249No hitNo description
PROSITE profilePS516718.856181257IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MALEAVAFPH NFFNYGCKEL YSLVEALEKE EIDTITTEED QVQWDASSSS EPKAAAVARR  60
KRRRSRSCKN KEEVENQRMT HIAIERNRRK QMNEYLSVLR SLMPESYIQK GDQASIVGGA  120
IDFVKELEQL VQTLEAQKRI KERRECPRPF GDLFALPRHP QPSLECAFGD VEVTMADSHA  180
TLKVLSRRRP RQLLKLVAAF HNLRLTILHL NITTVDQMVL YSFSVKVEEE CRITSVDEIA  240
SAVYEILGKI HEEASLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963RKRRR
25964RKRRRS
37788RMTHIAIERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827950.10.0transcription factor bHLH96
SwissprotQ9C7T46e-73BH096_ARATH; Transcription factor bHLH96
TrEMBLW1NIT00.0W1NIT0_AMBTC; Uncharacterized protein
STRINGERM953660.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]