PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00008.33
Common NameAMTR_s00008p00092930
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 520aa    MW: 57022.6 Da    PI: 6.5711
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00008.33genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA369.7e-12112139835
                                     GATA   8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                               TplWR+gp  ++ LCnaCG ++r kg+
  evm_27.model.AmTr_v1.0_scaffold00008.33 112 GTPLWRNGPADKPVLCNACGSRWRTKGS 139
                                              5********77777***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.13E-6112141No hitNo description
PfamPF003202.1E-9112139IPR000679Zinc finger, GATA-type
CDDcd002021.62E-12113160No hitNo description
Gene3DG3DSA:3.30.50.102.3E-8113139IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MENAQLLLGK KAEGQLGFQI PFLVAVFISE SAESIVFLGK IKWANRVLAA IVVLQQEDMP  60
ASVFNEGPKT TTNKSDGEVE VTCRSSWRVA HRQLGYSQLP QPRTTIKAYG RGTPLWRNGP  120
ADKPVLCNAC GSRWRTKGSL ANYAPLHARG VSPIDTENHK SPRVDKSPCR SRPPQFSMRT  180
NQDDRHAERI ERLQGYDPGP KGLEDDTSNR SSSGSGISYS ESCVQFGSTD VNDVTGSAQS  240
HVWDSHVPSK KRTCITRQYL SPVEKLRKDL CEILHEQDSS QLSGYSEDDV LLFDSETPMD  300
SVEIGLGSVL IKHPLSTSGE EESEASSLVA ESRCCIVNEA YSGSSLFPAP TLNRERGSIQ  360
VDDNAVKFRE GEMDRIFHEK MHTLANEPLE SLHSNNFDTL GRNDSASRYI DPNVKKNNEF  420
AEGKGVPSCS SGLVAGGVST AVKRPLDWEV CKSIEGAIEK PKSSLKRPYS CDDLSGHPTK  480
FQRIHSGANK SVRSGEFSDQ KELLQNDGFL SEPCSKAPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011626314.10.0GATA transcription factor 26 isoform X1
TrEMBLW1NJ900.0W1NJ90_AMBTC; Uncharacterized protein
STRINGERM952840.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-47GATA transcription factor 26
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]