PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.103
Common NameAMTR_s00009p00173620, LOC18422951
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 275aa    MW: 31415.6 Da    PI: 4.418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.103genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.8e-09156200655
                                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               +++ r+RR++i ++  eL +l+P+      +Kl+ ae+L++A +Y++ Lq
  evm_27.model.AmTr_v1.0_scaffold00009.103 156 SIAARQRRKKISEKTRELGKLIPNG-----TKLNTAEMLQEASQYVNFLQ 200
                                               6788*******************97.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.605150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-12151208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.49E-11153204No hitNo description
Gene3DG3DSA:4.10.280.105.3E-12153207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6156200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-11156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDSCLLSEYP CTHELFSFNH MEDSFAEEIL SIFNNCNETI NPCLMDYFQT QAPEIFFNDP  60
YTLQPQTLQF DEYESLYSFE PVQKRLKPWT QNHTMETQYN QYINSSDSYS DMYFSQHEGN  120
YWPMPDYMPE TAFPAKVPPF SGGVMQKPAE ILSAQSIAAR QRRKKISEKT RELGKLIPNG  180
TKLNTAEMLQ EASQYVNFLQ AQLSLLKLMD STSTPIEEEL GVLCGSLTIQ EKLCEEGKCL  240
ASTKFMKSLV QDSKILGDHA LSKDLMCLIQ SLET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827500.10.0transcription factor bHLH53
TrEMBLW1NHF60.0W1NHF6_AMBTC; Uncharacterized protein
STRINGERM949160.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59691219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.16e-24bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]