PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.124
Common NameAMTR_s00009p00194700, LOC18422819
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 163aa    MW: 17751.5 Da    PI: 6.6809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.124genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-052648123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                              y+C+ C++ Fs+   L  H++ H
  evm_27.model.AmTr_v1.0_scaffold00009.124 26 YECTFCKRGFSTAQALGGHMNIH 48
                                              99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-51752IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.05E-72352No hitNo description
PfamPF139126.7E-72650IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.4272653IPR007087Zinc finger, C2H2
SMARTSM003550.00992648IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEPSRSPGSR QDPEHPELDT GPNRSYECTF CKRGFSTAQA LGGHMNIHRK DRARLRQPPV  60
QEDESMGSSR HPSMTTGGTI GRGESQMSYS PKYYHGAASV RPAMIDTGKP PQLRLFSEIR  120
EEGSSGARAR SSGEPEGTQE GSRNPAAEEE KLDLELRLGP DP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827521.11e-115transcriptional regulator SUPERMAN
TrEMBLW1NGL51e-113W1NGL5_AMBTC; Uncharacterized protein
STRINGERM949371e-114(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-17C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]