PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00009.28

Common Name

AMTR_s00009p00081210

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

TCP

Protein Properties

Length: 199aa MW: 21164.2 Da PI: 8.9312

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.28	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.8	3.9e-34	23	94	4	73
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..sec 73 k ++ + h+kv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq+a+pai ++tg++++++ s+c evm_27.model.AmTr_v1.0_scaffold00009.28 23 KAASSRDYHSKVNGRGRRIRMPALCAARIFQLTRELGHKSDGQTIEWLLQKAEPAIMAATGSGTIPSlsSSC 94 556788********************************************************9999965555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-29	26	106	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.111	27	81	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MATDLMLHHS PKSSSENTPA KRKAASSRDY HSKVNGRGRR IRMPALCAAR IFQLTRELGH 60 KSDGQTIEWL LQKAEPAIMA ATGSGTIPSL SSSCSLFVPS STSNPSMLAP VRVLAAPVRV 120 MPAAPVRVLG PIEEQFPTRF LALSGSSTGG GVSSGGFRHM PFTAMLLRPV DDEDRDGPIM 180 DDCSFELSIN GSSELTLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011625716.1	1e-129	transcription factor TCP11
TrEMBL	W1NH94	1e-141	W1NH94_AMBTC; Uncharacterized protein
STRING	ERM94841	1e-142	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-30	TCP family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00009.28

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]