PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.56
Common NameAMTR_s00009p00114640
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 1754aa    MW: 195660 Da    PI: 7.17
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.56genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001316661688323
                                               ET..TTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                                               C+   C k+F+++ +L+ H+r+H
  evm_27.model.AmTr_v1.0_scaffold00009.56 1666 CTikGCRKRFNSHKYLVLHQRVH 1688
                                               66669****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.0E-121555IPR003349JmjN domain
PROSITE profilePS5118313.371657IPR003349JmjN domain
PfamPF023753.9E-141750IPR003349JmjN domain
SMARTSM005581.3E-44354523IPR003347JmjC domain
SuperFamilySSF511975.49E-26355523No hitNo description
PROSITE profilePS5118435.512357523IPR003347JmjC domain
PfamPF023737.0E-35388506IPR003347JmjC domain
SMARTSM003555316411663IPR015880Zinc finger, C2H2-like
SMARTSM003550.1516641688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.98816641693IPR007087Zinc finger, C2H2
SuperFamilySSF576678.16E-616651701No hitNo description
Gene3DG3DSA:3.30.160.602.8E-516661687IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028016661688IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-816881715IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00416941718IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.84516941723IPR007087Zinc finger, C2H2
PROSITE patternPS00028016961718IPR007087Zinc finger, C2H2
SuperFamilySSF576676.26E-917041746No hitNo description
Gene3DG3DSA:3.30.160.603.1E-917161747IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.517241750IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6617241753IPR007087Zinc finger, C2H2
PROSITE patternPS00028017261750IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1754 aa     Download sequence    Send to blast
MEDLEIPEWL KGLPLAPEYR PTETEFADPI AYISQIEKDA SQFGICKIIP PFPRPAKKYV  60
FANLNKSLAK LKEHEVMDQR ENSCPVSRSM GPLSSTRRGL SLMGHVIEEN ENDGLAVFTT  120
RHQELGWNPR KIRGAGQSGV HMQVWQSGES YSLEQFESKS RVFARNQFGS YKETSPLLIE  180
TLFWKAASEK PIYVEYANDI PGSGFGEPEG LFKFSYRRHR RKKINPKGNY SANPNKLGRE  240
RNMGLSTKDG NSGKQPNKDG AERNFGLGTK GDTCVEELNK RGDETNIVPD TKDGYHVKEA  300
SHDDIKNGCD LMRTLGDSEL SFDSSTVPLP REGQRSREKT SNYGGDMEGT AGWRLANSPW  360
NLQIIARSPG SLTRYMADDI PGVTSPMIYI GMLFSWFAWH VEDHELHSLN FLHTGSPKTW  420
YAVPGDAASS FEEVVRLKGY GGHLDSLGSF SALGEKTTLL SPEIIVASGI RCCRLVQHPG  480
EFVVTFPRAY HVGFSHGFNC GEAANFATPQ WLKVAKEAAV RRAALSYLPM LSHQQLLYML  540
TLSFDSRIPA AFPAVPRRSR LRDKKKEDRE MILKEAFIGD MKEEMEILNI LIGKKSAQYL  600
VSWDPELLPA PCDPSLRSSP ATGKMHLNPD EKSLNFCNKD AHNLLHDGPD ELSLAGFHVD  660
SGTLTCVACG VLGFPCMAVI QPSEQARKNL YSEFDEVDHE ECGISISLKS QCPTLVADDA  720
NPNSDVLEAP VIGPEVQKDL SEEEKQMFYE NSLNPTDVSI SYLDLGRDSS PKCEDHVSES  780
QPAYVLDNID LLSDGPKEAC FTSSIVEADT NCHSLKAAPP LKEPAEMEEK GILVTENFEE  840
MDSKTMSGSG LEKSCNNAEG LMSGPPGNGS SQLTNHWNLS EDNFRPRIFC LEHAFEVDKM  900
LQRKGGVNML LLCHSDYPKI QERAVSVAEE IGANFNCKGI PLVAATPSEL ELIYISIDDE  960
EHEESGKDWT SKLGVNLQHS INLCKSSSAK EGHHGLGLSV LFPENIWGRG FYASGLKWKF  1020
QKSRSHNKAK TYQKRPSIAG QWSQHNLEGN LVQGDLAGQQ EENSSLKKCR RPRGRPRKHA  1080
VDKHHDGGKI TSPAGERLVN KNTDILQSSM ISEQPRFQKI NAEQTNKESE VSANCMDGEN  1140
PEKADSARSG GKPIIKKGSK RSLLIEKRKP DSCIMTSEEA NMLTEVPALN FCLDRDDPDN  1200
INSAPFETKP VSKTGRKRRN RTQEGEVDSC IMSSEETNIV DEAFMPKHGL DRENSENVVF  1260
TPSETKPFVK RRKEVANEVN ANSCIISSKE TNMVAEIPAS KHLSERENPR NVNPIPSETK  1320
PVAKTGRKRK EVTNEGNTDS CIMISEETNM VPKMPTSIHC SDKGNPENID SVPSETKPHA  1380
EGSKKRLITQ EGNADSCTNG SEETHMSDEI LTLKRSSDRE NPENIDPAPI EAKPIAYNRR  1440
KRRKTAPEGN DDLCNKKPEE TNMETEVSTS KHDLDKEAPE HSDSASLDTK PVVKKGTKGK  1500
REVFQKGTHS SYSRSGFCLS PCENLRPRSN TFCLSPCENL RPRSNDSVSQ SKEEISGVRR  1560
KSSREKKWVG MERAGNREVE GVKLKGNGSY KEVEGVKLKG NGSYKEVEGV KLKGNGSYKE  1620
VEGVKLKGNG SYKEVEEEGS YRCDIERCTM CFVTKGELLI HKKNGCTIKG CRKRFNSHKY  1680
LVLHQRVHME ERPLKCTWTG CKMTFKWAWA RTEHLRVHTR ERPYKCGAPG CDRTFRFVSD  1740
ISRHKRKTGH CVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A6e-56331537131346Transcription factor jumonji (Jmj) family protein
6ip4_A6e-56331537131346Arabidopsis JMJ13
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020525113.10.0lysine-specific demethylase SE14 isoform X1
TrEMBLW1NI360.0W1NI36_AMBTC; Uncharacterized protein
STRINGERM948690.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP75061114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-132C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]