PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.14
Common NameAMTR_s00010p00030830, LOC18421956
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 446aa    MW: 49173 Da    PI: 8.2411
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.14genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.2e-10160199544
                                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                                              k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++
  evm_27.model.AmTr_v1.0_scaffold00010.14 160 KTLRRLAQNREAARKSRLRKKAYVQQLETSRLKLQQLEQE 199
                                              788*************************965555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-7152203No hitNo description
SMARTSM003387.9E-11156219IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438158202IPR004827Basic-leucine zipper domain
PfamPF001701.0E-6160200IPR004827Basic-leucine zipper domain
CDDcd147089.76E-21160212No hitNo description
SuperFamilySSF579598.75E-7160203No hitNo description
PROSITE patternPS000360163178IPR004827Basic-leucine zipper domain
PfamPF141441.1E-30242317IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MQSFAPPPGS YALGAESSRG HSRVSDAGEL EQSTGFRVDD AVNLSRGIIF NPKPGSPVVT  60
SSPLKFGALN KQIDSSDIPS STNRGELGRT SSLKGLQTNT GSLSNNQFDS WGDSGMADTS  120
PRTDTSTDVD TDEKNQQFLE GQRASSDSLD RSKDKTGDQK TLRRLAQNRE AARKSRLRKK  180
AYVQQLETSR LKLQQLEQEL QRARQQGIFI AGAGDQNHSM GGNGALAFDM EYARWLDEHQ  240
RQINDLRSAM NSHVGENELR ILVDAVMQHY DEIFRIKGTG TKSDVFHMLS GMWKTPAERC  300
FMWLGGFRSS ELLKILLSHL EPLTEQQLMG ICNLQQSSQQ AEDALSQGME ALQQSLAETL  360
ASGSLGPPGS SGNVANYMGQ MAMAMGKLGT LENFLRQADN LRQQTLQQLH RILTTRQSAR  420
ALLAISDYFS RLRALSSLWL ARPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826801.10.0transcription factor TGA2.3
RefseqXP_011621010.10.0transcription factor TGA2.3
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLW1NF200.0W1NF20_AMBTC; Uncharacterized protein
STRINGERM940380.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-146TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]