PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.176
Common NameAMTR_s00010p00194910
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 273aa    MW: 29988.7 Da    PI: 7.1801
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.176genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.6e-2196145255
                                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  evm_27.model.AmTr_v1.0_scaffold00010.176  96 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 145
                                               59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.26E-3495155No hitNo description
SMARTSM003801.0E-3796159IPR001471AP2/ERF domain
PROSITE profilePS5103223.26196153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3296154IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2396154IPR016177DNA-binding domain
PRINTSPR003672.2E-1197108IPR001471AP2/ERF domain
PfamPF008472.4E-1497145IPR001471AP2/ERF domain
PRINTSPR003672.2E-11119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVSQGVFVPE PAFLSMAHEH RTDIQPTLNP LQIQAQAHLQ WQQQQQQSIQ FHHSHPQAHQ  60
RLNPLAFLGP RAQPMKRMGA PRAMNHGSTG SKPAKLYRGV RQRHWGKWVA EIRLPKNRTR  120
LWLGTFDTAE EAALAYDKAA YKLRGDYARL NFPHLRHHLG FNGGNELGSL QSSVDAKLQA  180
ICQGLVGSGQ VSVPSATGLV KTEEVTSVVG SESEDSGEVA GNSSPSPDLS PDSGVKQPDF  240
SGPPWDDLDA YLLMKLPSLD QDLNWDLILS DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2195153160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-2194153363ATERF1
3gcc_A4e-2194153363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621406.10.0ethylene-responsive transcription factor ERF060
SwissprotO656652e-57ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLW1NGC90.0W1NGC9_AMBTC; Uncharacterized protein
STRINGERM942000.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-40ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]