PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.260
Common NameAMTR_s00010p00229220
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 243aa    MW: 26452 Da    PI: 6.8015
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.260genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.63.1e-14197241347
                                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                                               + +r++r++kNRe+A rsR+RK+a++++Le +  +L + N +Lkk
  evm_27.model.AmTr_v1.0_scaffold00010.260 197 AERRQKRMIKNRESAARSRARKQAYTKQLEHELSKLRTTNVMLKK 241
                                               568****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-4195242IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.875197241IPR004827Basic-leucine zipper domain
PfamPF001701.8E-12197241IPR004827Basic-leucine zipper domain
CDDcd147075.24E-22199241No hitNo description
SuperFamilySSF579591.2E-9199240No hitNo description
Gene3DG3DSA:1.20.5.1706.3E-12199241No hitNo description
PROSITE patternPS000360202217IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGYDATLHQF QPLARQSSIF NLAIEELQSH GGDLSKALTT MNIDEFFKGA CPSSDEAPGS  60
NSGVAVTLED FLQRAAGLVD ENLNAPAMSP ATNTLPLMGF NQAQALSGQG LHGQPAEFLQ  120
YPMNVPSIEQ QQGLMVSYGA PMHVSGAYGV GGSVPLMDAG YGEMPLPVPS PMMGFSSDTQ  180
TPRQRWHVAD EVLDKAAERR QKRMIKNRES AARSRARKQA YTKQLEHELS KLRTTNVMLK  240
KIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020518837.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
TrEMBLW1NGG20.0W1NGG2_AMBTC; Uncharacterized protein (Fragment)
STRINGERM942840.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10063711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.13e-27ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]