PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.267
Common NameAMTR_s00010p00231750
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 367aa    MW: 41817.6 Da    PI: 8.8018
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.267genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.9e-1176120246
                                               XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                    bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                                               +++k+ rr+ +NReAAr+sR+RKka++++Le    +L++  ++L 
  evm_27.model.AmTr_v1.0_scaffold00010.267  76 PSDKVLRRLHQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELE 120
                                               689****************************98777776665443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-975127No hitNo description
SMARTSM003384.3E-675135IPR004827Basic-leucine zipper domain
PfamPF001702.9E-877121IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.1477133IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.06E-779131No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
PfamPF141443.0E-29165240IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MNSPSTQFAI SRSMGMLDPN YQYNIWEEPF KAEHSPNSGQ SMLDDADVKI DMRSENVVTH  60
GKIALMKGSD QAAVKPSDKV LRRLHQNREA ARKSRLRKKA YVQQLESSRL KLTQLEQELE  120
RARQQVIEYM SRLSKYGLYD LLKLAECAAA FELEYANWVE EQNRQLDDLR TALQAHVTDQ  180
DLRKHVDSGM AHYDSLFRMK SFAAMTDVFY IMSGMWKSGA ERSFMWIGGY RPSELLKILH  240
PKLHPLSEQQ LVDVWNLQQS SQQAEDALSQ GMENLNQTLA AAMASDPIGA PNVSNYMGQM  300
AVAMGKLEDL QNFVHQADNL RQQTLKQMHR ILTNRQAARG LLALGDYLQR LRTLSSLWAA  360
RPREPA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621686.10.0transcription factor TGA2.2 isoform X1
RefseqXP_020522128.10.0transcription factor TGA2.2 isoform X1
SwissprotQ391621e-130TGA4_ARATH; Transcription factor TGA4
TrEMBLW1NFN70.0W1NFN7_AMBTC; Uncharacterized protein
STRINGERM942910.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26791132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-115TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]