PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.303
Common NameAMTR_s00010p00240320, LOC18422355
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 164aa    MW: 18065.4 Da    PI: 6.5252
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.303genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-162264248
                                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                                              gy GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++ 
  evm_27.model.AmTr_v1.0_scaffold00010.303 22 GYLGVRRRP-WGRYAAEIRNPNT---KERHWLGTFDTAEEAALAYDL 64
                                              799******.**********933...5******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-182280IPR016177DNA-binding domain
SMARTSM003801.3E-242286IPR001471AP2/ERF domain
PROSITE profilePS5103220.2182280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-252379IPR001471AP2/ERF domain
PRINTSPR003674.9E-92334IPR001471AP2/ERF domain
PfamPF008477.3E-112365IPR001471AP2/ERF domain
CDDcd000183.35E-222679No hitNo description
PRINTSPR003674.9E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAGLGHGVQW PSRRRRGREG GGYLGVRRRP WGRYAAEIRN PNTKERHWLG TFDTAEEAAL  60
AYDLTSISFS GLGKARTNFV YPILQPVPPP PPPRTPLECR VVEAVAPDND DSWQIATILQ  120
SFRQVDEQGS SPSLLDSLGL LCMVDDQTSL WYIGEESGKL TLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-151771964Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827090.11e-117ethylene-responsive transcription factor LEP
TrEMBLW1NEW71e-116W1NEW7_AMBTC; Uncharacterized protein
STRINGERM943271e-117(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.17e-23ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]