PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.404
Common NameAMTR_s00010p00257650
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 232aa    MW: 25768.7 Da    PI: 5.9949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.404genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.4e-06655154
                                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                              r++ + erE+  R++ N+ f eL + l ++     + + Ka+iL  A++ +++L
  evm_27.model.AmTr_v1.0_scaffold00010.404  6 RKVHKAEREKLKRNQFNELFLELGQALEPD----RQNNGKASILIDATRVLRDL 55
                                              678889**********************98....68899999******999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.99E-4355No hitNo description
Gene3DG3DSA:4.10.280.107.5E-7374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-10469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.728555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGRVSRKVHK AEREKLKRNQ FNELFLELGQ ALEPDRQNNG KASILIDATR VLRDLFAHVE  60
FLKTENAALL TESRYIAEEK NELRDEKLVL EAEIEKLQSE LQQKIESNAL RDPPPHNAHS  120
HDANSVPTPL SVEHVPPHVV GPVLVIPLHP DPHLESDSGF NGGGASVSVR NSQPNVSVSN  180
SESRLNLRRP HPRYPTPDDS WAEELLKQPR NLQVDSADSV GVASVYNAGF D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020519026.11e-168transcription factor bHLH47 isoform X1
TrEMBLW1NG191e-165W1NG19_AMBTC; Uncharacterized protein
STRINGERM944281e-166(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6793812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.37e-34bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]