PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.454
Common NameAMTR_s00010p00261450, LOC18422226
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ZF-HD
Protein Properties Length: 233aa    MW: 25868.4 Da    PI: 9.1241
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.454genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.17.9e-322989359
                               ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gt...aaalkCaACgCHRnFHRrevee 59
                                              ++ Y+eClkNhAaslGgha+DGCgEfmp +ge  +t   ++ lkCaACgCHRnFHRre e 
  evm_27.model.AmTr_v1.0_scaffold00010.454 29 RILYRECLKNHAASLGGHALDGCGEFMPISGEIlATgisPEDLKCAACGCHRNFHRREIEG 89
                                              578**************************9887655666999***************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.8E-283087IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-183086IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.8723286IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-293287IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.3E-29148221IPR009057Homeodomain-like
SuperFamilySSF466896.53E-19149221IPR009057Homeodomain-like
TIGRFAMsTIGR015653.8E-28160216IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDLSGGKAPE IPAVRFTDTK SINGRKLPRI LYRECLKNHA ASLGGHALDG CGEFMPISGE  60
ILATGISPED LKCAACGCHR NFHRREIEGA DSRGILCDCF VKNSRKRSPP PYYQASSFNS  120
APHMLLALSA GLPEGEQEVR ERKLVERESN GNGKEEGGTR KRFRTKFTAE QKEKMYGFSD  180
KLGWKMQKQD EGLIQEFCDE IGIRRSVLKV WMHNNKSTLG RKDPHLNGNA SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-241592181675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827241.11e-173zinc-finger homeodomain protein 2
SwissprotQ9FKJ95e-55ZHD12_ARATH; Zinc-finger homeodomain protein 12
TrEMBLW1NG611e-172W1NG61_AMBTC; Uncharacterized protein
STRINGERM944781e-173(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.12e-57homeobox protein 26
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]