PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.504
Common NameAMTR_s00010p00264750
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family M-type_MADS
Protein Properties Length: 278aa    MW: 31383.9 Da    PI: 9.5718
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.504genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.29.4e-231053245
                                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                              + en+  rqvt+skRr+gilKKA ELS+LCd+++a+++fs+tgk
  evm_27.model.AmTr_v1.0_scaffold00010.504 10 KLENTNGRQVTYSKRRAGILKKARELSILCDIDIALLMFSPTGK 53
                                              6799**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.175153IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-26293IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-18323IPR002100Transcription factor, MADS-box
PfamPF003199.6E-211154IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQVT YSKRRAGILK KARELSILCD IDIALLMFSP TGKPTLCLGE  60
RSNIEDVIHR FASLTPQERA KRKLESLEDL ENQIRQLQAQ LSEVHKRLSY WTDPERIDNA  120
DRIIAMAETL KESLTRVRAL KESFAKHQFL TLPCSSHQYQ NGINLPLGIS GDQQTQPLSW  180
VPNHDGHHLM LQEDPNLALS QSPPGSSLLN EMDIDGGESG ACQWGHFLFR QVTFFPSLCI  240
ASDGIWNAPR MALSHLSQVS LEVAGRWRSV VQGRRRR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020521208.11e-137agamous-like MADS-box protein AGL65 isoform X2
SwissprotQ7X9I02e-62AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLW1NGA50.0W1NGA5_AMBTC; Uncharacterized protein
STRINGERM945280.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59461119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.16e-65AGAMOUS-like 65
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]