PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.54
Common NameAMTR_s00010p00098700
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 284aa    MW: 31743.7 Da    PI: 4.6126
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.54genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-2075124255
                                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                              +y+GVr+++ +g+W+AeIrdp     +   r++lg+f taeeAa+a++a + +++g
  evm_27.model.AmTr_v1.0_scaffold00010.54  75 KYRGVRQRP-WGKWAAEIRDP-----HrgIRVWLGTFETAEEAARAYDAKAVEYRG 124
                                              8********.**********6.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-3274133IPR001471AP2/ERF domain
PROSITE profilePS5103224.72475132IPR001471AP2/ERF domain
PfamPF008473.8E-1375124IPR001471AP2/ERF domain
SMARTSM003801.7E-3375138IPR001471AP2/ERF domain
CDDcd000187.09E-3475134No hitNo description
SuperFamilySSF541711.18E-2375133IPR016177DNA-binding domain
PRINTSPR003674.5E-127687IPR001471AP2/ERF domain
PRINTSPR003674.5E-1298114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSKRTTPPSH LGDHQAHRQE QEDAIMVRAF QQVISGASCS PDELEPAPSE TCGGSSSLPV  60
EPTADPTSSS SKRRKYRGVR QRPWGKWAAE IRDPHRGIRV WLGTFETAEE AARAYDAKAV  120
EYRGPRANLN FPDDALLLYQ AASPIPRAPE KSNYQFESQP YQPHQQSTEL QEVGSTSGSI  180
SSQVDAREQV NVQYRQTVQT SDYPVWDMVP NSSSCEHYYS TYESFSTECE VYDSLSEPLP  240
QQNQTEGLPV SFATIPLDQD WSFTNPLDEF PFVATTRPPD HIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2271132163ATERF1
3gcc_A1e-2271132163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011622686.20.0ethylene-responsive transcription factor ERF113
TrEMBLW1NF530.0W1NF53_AMBTC; Uncharacterized protein
STRINGERM940780.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-23ethylene response factor 110
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]