PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.55
Common NameAMTR_s00010p00099690
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 287aa    MW: 32348.3 Da    PI: 4.6711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.55genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1976126256
                                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                                              +y+GVr+++ +g+W+AeIrdp     +   r++lg+f taeeAa+a++a + +++g+
  evm_27.model.AmTr_v1.0_scaffold00010.55  76 KYRGVRQRP-WGKWAAEIRDP-----HraIRVWLGTFETAEEAARAYDAKAVEYRGA 126
                                              8********.**********7.....338*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-3175134IPR001471AP2/ERF domain
CDDcd000182.20E-3276135No hitNo description
SuperFamilySSF541719.15E-2376134IPR016177DNA-binding domain
SMARTSM003802.2E-3276139IPR001471AP2/ERF domain
PROSITE profilePS5103224.52676133IPR001471AP2/ERF domain
PfamPF008473.2E-1276125IPR001471AP2/ERF domain
PRINTSPR003674.5E-127788IPR001471AP2/ERF domain
PRINTSPR003674.5E-1299115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSKRTTPPSH LGDHQAHRQE QEDAIMVRAF QQVISGCGPD ELEPAPSETC SWSSSSPVEP  60
TADPSPQASS SSRRRKYRGV RQRPWGKWAA EIRDPHRAIR VWLGTFETAE EAARAYDAKA  120
VEYRGARANL NFPDDSLPLY QAASHIPRSP EKFNYQFESE LYQPHQPSTE LREVGSASGP  180
ISSQGDARIN EQVNVQYQQS LQTSDYPVWD MVPNSSSCEH YYSTYESFST ESEFYNSLSA  240
PLPQQNQTEG LPVSFATIPL DQDWFFTNPL DEFPFVATTW PPDHIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2172133163ATERF1
3gcc_A3e-2172133163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826842.30.0ethylene-responsive transcription factor ERF113
TrEMBLW1NFV40.0W1NFV4_AMBTC; Uncharacterized protein
STRINGERM940790.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.14e-21related to AP2 6
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]