PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00011.126
Common NameAMTR_s00011p00235740, LOC18422637
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 294aa    MW: 33560.1 Da    PI: 5.7893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00011.126genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.82.9e-06175218755
                                               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                + r RR++i ++  eL +l+P       ++++ ae+L++A +Y+  Lq
  evm_27.model.AmTr_v1.0_scaffold00011.126 175 VAARIRRKKISEKTRELGKLIPGG-----TRMNTAEMLQEASKYVIFLQ 218
                                               56799*****************87.....8**************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.233168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-9171224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.99E-9171222No hitNo description
SuperFamilySSF474591.23E-10171225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-9174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MYKFELRNTN QASKDRIHCL AFLHRIFSLM DSRFVSDYTP IPNLASFNER EACFSEEILG  60
IFNNCCEATN PYLHYEPTQV FNPQTQSLHP QEHFYDYCHF LETPSKRQSP WLQTPLMEEE  120
YISNKNPSVP YDGFLYGDDV QGFWHLPGIG FQGSIPSFSG EVAQKPAAVL SAQSVAARIR  180
RKKISEKTRE LGKLIPGGTR MNTAEMLQEA SKYVIFLQAQ LSLLEFMASN DSTLVKEELG  240
ILCSSPNIQE KLYDEGKCIA STQFVKSLIQ EPMLHENHDL HRDLKCLVQS LEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006878557.10.0transcription factor bHLH53
TrEMBLW1NG050.0W1NG05_AMBTC; Uncharacterized protein
STRINGERM947020.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59691219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-24bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]