PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00011.138
Common NameAMTR_s00011p00241810, LOC18422556
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 442aa    MW: 48039.7 Da    PI: 5.9286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00011.138genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.65.9e-10251298455
                                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  evm_27.model.AmTr_v1.0_scaffold00011.138 251 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 298
                                               8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-17245316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-10245302No hitNo description
Gene3DG3DSA:4.10.280.102.1E-17247314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618247297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7251298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-9253303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MARHPGSAQS HHYRLEPTID LCSMDMTVLE RQRTRLKWLK PQDFGGSAST NLFPTGSQAD  60
KHQESSTALI EMLSRADGRD GGWPDLTAGY LAQGGGFEPL PEPARLGFGT GGSAAANNSE  120
MEAACRGLGQ AAISRSSSCP ADIDGQEEDE KGRVAASLKG SFKKRKAEKA QGHASEASSP  180
KGMVTEEMKD KRIKGERDGD GDEEVSKQRR NDNNNTSEMS VETTKDSSKA SEVQKPDYIH  240
VRARRGQATD SHSLAERVRR EKISERMKYL QDLVPGCNKI TGKAGMLDEI INYVQSLQQQ  300
VEFLSMKLAA VNPRLDFNID NFFTKEIFSP CNSSMVSPEL ASASYLHFNT AQPAAMQPVT  360
PCCGLDVPIS TTEALRRTTS GPVTIPDPFI EPGFQGNGSL PTWDADLQAL YNMGFLQGRP  420
AAFPSPPFPG TQEANNLKME M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157165LKGSFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006878569.10.0transcription factor bHLH63 isoform X2
RefseqXP_011623737.10.0transcription factor bHLH63 isoform X1
TrEMBLW1NHQ10.0W1NHQ1_AMBTC; Uncharacterized protein
STRINGERM947140.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-60cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]