PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00011.164
Common NameAMTR_s00011p00253850
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 202aa    MW: 22288.7 Da    PI: 7.7997
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00011.164genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.81.9e-2092126135
                                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                               C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  evm_27.model.AmTr_v1.0_scaffold00011.164  92 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 126
                                               ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.10186122IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-1986139IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-1489128No hitNo description
Gene3DG3DSA:3.30.50.104.5E-1789132IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.32E-1391123No hitNo description
PROSITE patternPS00344092117IPR000679Zinc finger, GATA-type
PfamPF003204.1E-1892126IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MHRASSLEEG CSSVDCTLSL GPPSARQRGA SSSSDLGSRP GCGQSSPTGA TRFWWDIDLQ  60
LMHRQQQHQA RQQQRRSSGL SVGGDPLMAR RCANCDTTST PLWRNGPRGP KSLCNACGIR  120
YKKEERRSTT AEHYNEQQQQ QHVVGHLFNP HHLSPRSPSF PLAVEDEEDE EREKAEMVGG  180
APCVSWRLGL STDFSVVHHL T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020524034.11e-148GATA transcription factor 18
TrEMBLW1NHU71e-146W1NHU7_AMBTC; Uncharacterized protein
STRINGERM947401e-147(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.15e-28GATA family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]