PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00011.170

Common Name

AMTR_s00011p00255340

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

ZF-HD

Protein Properties

Length: 243aa MW: 26943.6 Da PI: 9.4269

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00011.170	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.3	2.7e-31	44	100	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 + +Y eClkNhAa++Ggha+DGC+Efmps geeg++++lkCaAC+CHRnFHR+++ee+ evm_27.model.AmTr_v1.0_scaffold00011.170 44 NSHYGECLKNHAAAIGGHALDGCCEFMPS-GEEGSIESLKCAACNCHRNFHRKDSEEN 100 679***********************9.999******************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.5E-28	46	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.5E-29	46	96	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.717	47	96	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-19	47	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.3E-30	168	239	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.45E-19	169	238	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.2E-27	178	234	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MPISVGFGPI HQSPTKPAKP THCEARLEPA PPHVSPNPRL KRRNSHYGEC LKNHAAAIGG 60 HALDGCCEFM PSGEEGSIES LKCAACNCHR NFHRKDSEEN SIPQSCLYCY HRSPKAVKSN 120 NHFLPLPSSP QGVIPGPPFS MVAFGPNDSS SEDLHNQVIR PMCVVSKQSN GNKGSDHKRF 180 RTKFTQEQKE RMLGFAERVG WRIQKQDEGA VQRFCDEVGV KRHVLKVWMH NNKNTLGKKS 240 SS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-26	178	235	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011623848.1	0.0	zinc-finger homeodomain protein 2
Swissprot	A2Z259	6e-63	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	6e-63	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	W1NH17	1e-180	W1NH17_AMBTC; Uncharacterized protein
STRING	ERM94746	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	4e-60	homeobox protein 31

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00011.170

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]