PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00011.229

Common Name

AMTR_s00011p00266130

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

SRS

Protein Properties

Length: 216aa MW: 22320.1 Da PI: 9.7832

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00011.229	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	101.2	1.9e-31	134	194	4	64
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaa 64 gt++CqdCGnqakkdC h+RCR CCks gfdCathvkstWvpaa+rr r+ ++a +s+ aa evm_27.model.AmTr_v1.0_scaffold00011.229 134 GTTTCQDCGNQAKKDCLHRRCRNCCKSPGFDCATHVKSTWVPAARRRGRHMAAAVTSEGAA 194 789*********************************************9777766655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-28	135	192	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.1E-26	137	179	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
THRDGTKGRE NQVRGGTVPR RPGEGVPDWG AGSSPPFDLC SAVAGELCLG FSGSSASAPS 60 AAGSSWLRLL NYGSIPLLQD IPMVLINSPF HDPTSASSGP AGGPSYCHQL VPEHSHSQGP 120 ERRGGESSGN TVGGTTTCQD CGNQAKKDCL HRRCRNCCKS PGFDCATHVK STWVPAARRR 180 GRHMAAAVTS EGAAAGGGKK PRLAAPLPLS LKRKK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006854799.2	2e-96	protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	W1NI02	1e-154	W1NI02_AMBTC; Uncharacterized protein (Fragment)
STRING	ERM94805	1e-155	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1313	15	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36260.1	5e-18	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00011.229

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]