PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00012.308
Common NameAMTR_s00012p00258620
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 202aa    MW: 22823.5 Da    PI: 4.8268
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00012.308genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-053456123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                              y+C+ C++ Fs+   L  H++ H
  evm_27.model.AmTr_v1.0_scaffold00012.308 34 YECTFCKRGFSTAQALGGHMNIH 56
                                              99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-73261No hitNo description
Gene3DG3DSA:3.30.160.601.7E-53260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.0E-73458IPR007087Zinc finger, C2H2
SMARTSM003550.00993456IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8633461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
METRPHPETP QTLTQENPLD HSEPDANFSI AKSYECTFCK RGFSTAQALG GHMNIHRRER  60
AKLKHSLSPL SPPHLGLVSL PSQSDNSMNY HPMYNSARGS SSYYEMEREN EDRWLSWPYL  120
VERDERETGD EEAVEIRQLP LFVEGPVERE RGSEDRGLVA EMKLGEMPGG GVEIHEGVDL  180
ELRLGREPQE IVLQLALKGL Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020524128.11e-147transcriptional regulator TAC1-like
TrEMBLW1PLJ81e-146W1PLJ8_AMBTC; Uncharacterized protein
STRINGERN080201e-146(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-13C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]