PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00012.78
Common NameAMTR_s00012p00140500
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GRAS
Protein Properties Length: 115aa    MW: 12762 Da    PI: 9.5242
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00012.78genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS72.86.2e-2381001103
                                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 
                                              lv+ L++cAeav+++++++a+al+++++ la ++  +++++a++f+eALa+r++r        ++p++t 
  evm_27.model.AmTr_v1.0_scaffold00012.78   8 LVHILMACAEAVQQENMSAAEALVKQIRMLAVSQTGALRKVATFFAEALARRIFR--------FHPQDTG 69 
                                              689****************************************************........7788877 PP

                                     GRAS  71 eknsseelaalkl.fsevsPilkfshltaNqaIl 103
                                                  ++  ++l++ f+ ++P lk++h+taNqaI 
  evm_27.model.AmTr_v1.0_scaffold00012.78  70 ---GDSFSNILQMhFYMTCPHLKIAHFTANQAIR 100
                                              ...44444444555*******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.7531114IPR005202Transcription factor GRAS
PfamPF035142.1E-208100IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MVDSGIRLVH ILMACAEAVQ QENMSAAEAL VKQIRMLAVS QTGALRKVAT FFAEALARRI  60
FRFHPQDTGG DSFSNILQMH FYMTCPHLKI AHFTANQAIR PLQGRRECML SISV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826893.15e-49DELLA protein GAI1
SwissprotQ8S4W77e-44GAI1_VITVI; DELLA protein GAI1
TrEMBLW1PKY49e-79W1PKY4_AMBTC; Uncharacterized protein
STRINGERN077901e-79(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.13e-43GRAS family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]