PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00012.85
Common NameAMTR_s00012p00149750
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WOX
Protein Properties Length: 236aa    MW: 26229 Da    PI: 7.7606
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00012.85genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.7e-212786357
                                             --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                                 Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                             +R+++tkeq+e+Le l+++  r+p+ae++++++++l    +++ ++V++WFqN++a++++
  evm_27.model.AmTr_v1.0_scaffold00012.85 27 SRWNPTKEQIEVLEGLYRQgIRTPTAEQIQQITRRLrvygHIEGKNVFYWFQNHKARQRQ 86
                                             7*****************99**************************************97 PP
2Wus_type_Homeobox114.93.9e-372588265
                        Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                             +++RW+Pt+eQi++Le ly++G+rtP++e+iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqkq
  evm_27.model.AmTr_v1.0_scaffold00012.85 25 VSSRWNPTKEQIEVLEGLYRQGIRTPTAEQIQQITRRLRVYGHIEGKNVFYWFQNHKARQRQKQ 88
                                             579***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.112287IPR001356Homeobox domain
SMARTSM003898.9E-52491IPR001356Homeobox domain
SuperFamilySSF466892.8E-122591IPR009057Homeodomain-like
PfamPF000467.2E-192786IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-82786IPR009057Homeodomain-like
CDDcd000868.37E-72888No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDALAPTISA EAEANGPPSP GTAAVSSRWN PTKEQIEVLE GLYRQGIRTP TAEQIQQITR  60
RLRVYGHIEG KNVFYWFQNH KARQRQKQRQ DSLLRANHRI PNVVCNPFYV SQSGLGMYPQ  120
FQRVMVPGGT TKRFNVGNNM EKGHETEGPS GNWGHHETLQ LFPVHPTGIL EDRYNLPHTN  180
LSSSPSSSSS TSSSSPSSSI VFGNYASFSG VNLEGNVEDC TEQPFFDFFS DHRFA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM8821418e-74FM882141.1 Amborella trichopoda partial wox2 gene for putative wuschel homeobox protein WOX2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624163.11e-132WUSCHEL-related homeobox 2
TrEMBLW1PD071e-175W1PD07_AMBTC; Uncharacterized protein
STRINGERN077971e-176(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP85821116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.14e-37WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]