PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00013.85
Common NameAMTR_s00013p00160270
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 119aa    MW: 13590.1 Da    PI: 9.5881
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00013.85genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.77.1e-117393121
                                             ---SS-EEEEEEE--TT-SS- CS
                                     WRKY  1 ldDgynWrKYGqKevkgsefp 21
                                             ldDgy+WrKYGqK vk+++fp
  evm_27.model.AmTr_v1.0_scaffold00013.85 73 LDDGYRWRKYGQKAVKNNKFP 93
                                             59******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-125893IPR003657WRKY domain
SuperFamilySSF1182901.27E-96594IPR003657WRKY domain
PROSITE profilePS5081112.1636893IPR003657WRKY domain
SMARTSM007748.9E-573113IPR003657WRKY domain
PfamPF031068.1E-77493IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MHPNSTNPSE FSRFYPEPKV PNPEEISHKK TEPEPLTGST ASGAQTQSAK KKGEKKVKRP  60
RYAFQTRSQV DILDDGYRWR KYGQKAVKNN KFPSWETETD EYEFSLLHAT YAVLSCFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624879.14e-63probable WRKY transcription factor 75
TrEMBLW1PIU87e-83W1PIU8_AMBTC; Uncharacterized protein
STRINGERN099071e-83(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-20WRKY DNA-binding protein 75
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]