PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00014.35

Common Name

AMTR_s00014p00103240

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

bHLH

Protein Properties

Length: 386aa MW: 42600.2 Da PI: 8.4624

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00014.35	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.8	3e-06	266	306	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+++ +++ L++l+ + +K + a++L +A+ YIk Lq evm_27.model.AmTr_v1.0_scaffold00014.35 266 KVRREKLGDRITALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 306 67***************98.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.852	256	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.70E-6	266	310	No hit	No description
SMART	SM00353	1.7E-4	266	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-12	266	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-10	269	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MMQAMKMFNL NNSALPFEPR DLKPNHEIQI PPNYSESTSM IPKLEFTYCT SSNGNYAHNS 60 DQELPTQVKM KQEISDPMSN YGRLASEPSI FQGIQLDYCK SNNDLEEFNR NLLLKCQILG 120 SSISARDSYQ SPANLAHFPK FSRSGLFPQV LPSVEITSLY PTPSLVNPRC ENLMQALNFS 180 VTAKSGEIFH QTSACYPGSL SEARSCGLEY PQKHLQRPSS IPHKISTFME ETAGACRFGS 240 MGSTTASEAP SKRRRFEASS SFPPFKVRRE KLGDRITALQ QLVAPFGKTD TASVLMEAIG 300 YIKFLQEQVE TLSVPYMKLS GSNANAGRRR SHGDRTKNEG DKDGDGEPKR DLKSRGLCLV 360 PLSCTTLVTS DNGAPLWPPS KFGGP*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MMQAMKMFNL NNSALPFEPR DLKPNHEIQI PPNYSESTSM IPKLEFTYCT SSNGNYAHNS  60
DQELPTQVKM KQEISDPMSN YGRLASEPSI FQGIQLDYCK SNNDLEEFNR NLLLKCQILG  120
SSISARDSYQ SPANLAHFPK FSRSGLFPQV LPSVEITSLY PTPSLVNPRC ENLMQALNFS  180
VTAKSGEIFH QTSACYPGSL SEARSCGLEY PQKHLQRPSS IPHKISTFME ETAGACRFGS  240
MGSTTASEAP SKRRRFEASS SFPPFKVRRE KLGDRITALQ QLVAPFGKTD TASVLMEAIG  300
YIKFLQEQVE TLSVPYMKLS GSNANAGRRR SHGDRTKNEG DKDGDGEPKR DLKSRGLCLV  360
PLSCTTLVTS DNGAPLWPPS KFGGP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006847529.2	0.0	transcription factor bHLH110 isoform X2
TrEMBL	W1PPJ0	0.0	W1PPJ0_AMBTC; Uncharacterized protein
STRING	ERN09110	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1342	13	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00014.35

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]