PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00016.144
Common NameAMTR_s00016p00181650, LOC18434423
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 153aa    MW: 16857.9 Da    PI: 9.3364
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00016.144genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000295375123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                              ++C +C++ F ++  L  H++ H
  evm_27.model.AmTr_v1.0_scaffold00016.144 53 FSCLYCSRKFCTSQALGGHQNAH 75
                                              89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.64E-54980No hitNo description
PROSITE profilePS5015710.975380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDLHPHHSPS KAQSLFSQSQ NPDTAEKEAQ NLYFRSQNHV PTGQGQGKNR RFFSCLYCSR  60
KFCTSQALGG HQNAHKKERA AARRGITTVG FEGRSHVSQG YPLIWPCTWH VHPQGHEGLS  120
SSTVELAAVL DAPPPPHLPT NKSVDLDLTL RL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006844556.11e-111zinc finger protein KNUCKLES
TrEMBLW1PF341e-110W1PF34_AMBTC; Uncharacterized protein
STRINGERN062311e-111(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-15C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]