PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00017.117
Common NameAMTR_s00017p00197580
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 360aa    MW: 38867 Da    PI: 8.3067
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00017.117genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05117139223
                                               EETTTTEEESSHHHHHHHHHH.T CS
                                   zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                                Cp Cg+ F r +nL+ H+ + H
  evm_27.model.AmTr_v1.0_scaffold00017.117 117 ACPECGEIFMRAENLELHQAVkH 139
                                               6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.349116144IPR007087Zinc finger, C2H2
PROSITE patternPS000280116139IPR007087Zinc finger, C2H2
SuperFamilySSF563992.88E-18141357No hitNo description
Gene3DG3DSA:3.90.228.106.3E-13142357IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGGCSVSLCS SRENTRVMHR PETSPEKSSS SSSLSLSKVS LSSGSSSKRL AAKVDGFNAS  60
NRSMKSTSVV SEGSGNGGSS FRGMHLRRLS GCYECHMVVD PINGVFRDPS LRNSICACPE  120
CGEIFMRAEN LELHQAVKHA VSEIGPEDSS RNIVEIIFQS SWLKETPVCK IDRILKVHNS  180
QKTINRFEDY RDTVKSKANK LPKKHPRCIA DGNELLRFFC TTFSCSIGTN GSSSLCNSVC  240
NVCNIIKNGF KVDKNEGIIT TASSGKAHDS METELGAGER RAMLVCRVIA GRVKKNQEAT  300
EDGFCGGFDS VSGQGGLYSS LGFDSVAGQA GLYSSLDELF VFNPRAILPC FVVIYRNSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847058.20.0uncharacterized protein LOC18436773
RefseqXP_020524605.10.0uncharacterized protein LOC18436773
RefseqXP_020524606.10.0uncharacterized protein LOC18436773
TrEMBLW1PLK10.0W1PLK1_AMBTC; Uncharacterized protein
STRINGERN086390.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-90C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]