PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00018.9
Common NameAMTR_s00018p00040300, LOC18436343
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family B3
Protein Properties Length: 224aa    MW: 24552 Da    PI: 9.6413
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00018.9genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.61.4e-2917106185
                                             EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHH CS
                                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWk 66 
                                             f+kv tpsdv+k++rlv+pk++ae+h    +  + ++  l++ed ++g+ W+++++y+++s++yv+tkGW+
  evm_27.model.AmTr_v1.0_scaffold00018.9  17 FDKVVTPSDVGKLNRLVIPKQHAEKHfplgQAASDKGLLLSFEDnTTGKPWSFRYSYWNSSQSYVMTKGWS 87 
                                             89**************************99444557789*****8999*********************** PP

                                             HHHHHHT--TT-EEEEEE- CS
                                      B3  67 eFvkangLkegDfvvFkld 85 
                                             +Fvk+++L++gD+v F + 
  evm_27.model.AmTr_v1.0_scaffold00018.9  88 RFVKDKHLDAGDVVSFLRG 106
                                             ****************843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-3812123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2814116IPR015300DNA-binding pseudobarrel domain
CDDcd100176.52E-2615103No hitNo description
SMARTSM010191.2E-1817124IPR003340B3 DNA binding domain
PfamPF023627.5E-2617106IPR003340B3 DNA binding domain
PROSITE profilePS5086314.25417123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDLEDESRLS LDREHMFDKV VTPSDVGKLN RLVIPKQHAE KHFPLGQAAS DKGLLLSFED  60
NTTGKPWSFR YSYWNSSQSY VMTKGWSRFV KDKHLDAGDV VSFLRGTGPH GRDRLYIACA  120
RRPPAAPPML PVVAAHAPPP VFWPSAAYVS PQMLYLRAGV QALEPVVRAQ ERKRVRLFGV  180
NLECPQAPEG ESGGGSDRTV LARWSAVAAA AEVVQGPRPV PGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-57121263117B3 domain-containing transcription factor NGA1
5os9_B4e-57121263117B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624188.11e-164B3 domain-containing protein Os03g0120900
SwissprotO827996e-57NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLW1PJC41e-162W1PJC4_AMBTC; Uncharacterized protein
STRINGERN081031e-163(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-54B3 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  4. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  5. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  6. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  7. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]