PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00019.259

Common Name

AMTR_s00019p00212840, LOC18435509

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

C2H2

Protein Properties

Length: 168aa MW: 18242.2 Da PI: 8.7425

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00019.259	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	38	60	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H evm_27.model.AmTr_v1.0_scaffold00019.259 38 FPCNYCHRKFYSSQALGGHQNAH 60 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.15E-6	35	65	No hit	No description
PROSITE profile	PS50157	10.928	38	65	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	40	60	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MEEHFNPETT IIRKSSPPPS LSLELGLEQP YDLEPRVFPC NYCHRKFYSS QALGGHQNAH 60 KLERSLVKRA QRSSSALGGS GDSGSSGLGL GLRPHSMAQE VSGSRNWPQR IEPTGSRHAS 120 VGTLEEGFGV DGRREKVGFG SSEGERSWRN GGGTREDVPK LDLSLRL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006845616.2	1e-118	zinc finger protein 2
TrEMBL	W1PI41	1e-117	W1PI41_AMBTC; Uncharacterized protein
STRING	ERN07291	1e-118	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	1e-17	zinc finger protein 2

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00019.259
Entrez Gene	18435509

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]