PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00019.321
Common NameAMTR_s00019p00232450
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 195aa    MW: 22121.8 Da    PI: 7.4101
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00019.321genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-181159254
                                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                                              +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aaka+++a++ + 
  evm_27.model.AmTr_v1.0_scaffold00019.321 11 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAAKAYDEAARLMC 59
                                              69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.95E-341068No hitNo description
SMARTSM003807.9E-411174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-331168IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-201169IPR016177DNA-binding domain
PfamPF008478.9E-111160IPR001471AP2/ERF domain
PROSITE profilePS5103220.4951168IPR001471AP2/ERF domain
PRINTSPR003671.7E-101223IPR001471AP2/ERF domain
PRINTSPR003671.7E-103450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MPNTSMPRTQ RFRGVRQRHW GSWVSEIRHP LLKTRIWLGT FETAEDAAKA YDEAARLMCG  60
PRARTNFPFD PNNSQNSPRV LSPNLTAKLQ RCCLASLQEH KPSNPCRDKP GTSKRIENGG  120
ESSGSNGDHE KGQNCQNSDD ESIEQMIQEL LYYGSMEIGF ISLLGRSQRG ILINQEKFEI  180
NASDWSLIVE YFDW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-17875270ATERF1
3gcc_A4e-17875270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011623943.11e-118ethylene-responsive transcription factor ERF003
SwissprotQ94AW51e-53ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLW1PHA61e-144W1PHA6_AMBTC; Uncharacterized protein
STRINGERN073531e-145(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-44ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]