PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00019.328
Common NameAMTR_s00019p00235390, LOC18435579
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SBP
Protein Properties Length: 249aa    MW: 27548.9 Da    PI: 10.3931
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00019.328genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.71e-4040115176
                                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-- CS
                                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakh 69 
                                               +Cq+egC +dl++ak+yhrrhkvCe+hska+ v+++gleqrfCqqCsrfh l efDe krsCrrrLa+h
  evm_27.model.AmTr_v1.0_scaffold00019.328  40 RCQAEGCGNDLTNAKHYHRRHKVCEFHSKATRVIANGLEQRFCQQCSRFHVLAEFDEVKRSCRRRLADH 108
                                               6******************************************************************** PP

                                               -----S- CS
                                       SBP  70 nerrrkk 76 
                                               n+rrrk+
  evm_27.model.AmTr_v1.0_scaffold00019.328 109 NRRRRKN 115
                                               *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.9E-3437102IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.50538115IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-3839119IPR004333Transcription factor, SBP-box
PfamPF031101.5E-3041114IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MRSNGLGLNL GQRTYFSSSD GGVIVRRNSR GLFGGPVVPR CQAEGCGNDL TNAKHYHRRH  60
KVCEFHSKAT RVIANGLEQR FCQQCSRFHV LAEFDEVKRS CRRRLADHNR RRRKNGSDKL  120
GDATKNSIVS KAIVGSVSKL ETESPQKATA SAPLSLSQES ATFAEEAHHL FQFQSILLPN  180
KNSNLKTTRL PYASSSPIQN LLFNESTGFR ADNGLLSHHS FTTQQEDDQK GEVQGLANLG  240
HSIFKVQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-3031114184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845685.20.0squamosa promoter-binding-like protein 8
TrEMBLW1PJT40.0W1PJT4_AMBTC; Uncharacterized protein
STRINGERN073600.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-41squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]