PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00019.427
Common NameAMTR_s00019p00253580, LOC18435678
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 349aa    MW: 37982.7 Da    PI: 6.2604
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00019.427genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.95.1e-17260296135
                                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                               C++Cgt++  Tp++Rrgp g+++LCnaCGl+++ kg+
  evm_27.model.AmTr_v1.0_scaffold00019.427 260 CRHCGTSEksTPMMRRGPAGPRSLCNACGLMWANKGT 296
                                               **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.7E-8119154IPR010399Tify domain
PROSITE profilePS5132013.829119154IPR010399Tify domain
PfamPF062005.6E-10121153IPR010399Tify domain
PROSITE profilePS5101713.285188230IPR010402CCT domain
PfamPF062033.7E-16188230IPR010402CCT domain
PROSITE profilePS501149.117254312IPR000679Zinc finger, GATA-type
SMARTSM004014.2E-10254307IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-12256306No hitNo description
Gene3DG3DSA:3.30.50.102.1E-15259301IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.57E-15259303No hitNo description
PROSITE patternPS003440260287IPR000679Zinc finger, GATA-type
PfamPF003204.1E-15260296IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSDNHSVEIN SQANRNLHQH HTTFSHAYSA AQNPMTDPQV QMHGMHLPGQ IDDVNPEAQI  60
HGGDPMHVHY MQEHGHPLQN NDSGLEDDGE EGGGSEGMEG DGSSDAGNLG DPHTAIPLRS  120
QGTNQLQLSF QGEVYVFDSV APEKVQAVLL LLGGREAPSG LPAVPLYGHQ LSKGFTDPVT  180
QRMNQSHRMQ SLSRFREKRK ERNYDKKIRY SVRKEVAERM QRNKGQFTSS KNVSEDAPPP  240
ELTWESNPTW AAETNEPAIC RHCGTSEKST PMMRRGPAGP RSLCNACGLM WANKGTLRDL  300
SKGGTSLSIQ GHSTNSGEQN EANGTDIKGD SQVTQVVMAL PSNDNSSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845784.10.0GATA transcription factor 24
RefseqXP_020523606.10.0GATA transcription factor 24
SwissprotQ8H1G02e-85GAT28_ARATH; GATA transcription factor 28
TrEMBLW1PIA10.0W1PIA1_AMBTC; Uncharacterized protein
STRINGERN074590.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-79ZIM-like 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]