PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00019.433
Common NameAMTR_s00019p00254380
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 249aa    MW: 27675.3 Da    PI: 7.0302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00019.433genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-1283127655
                                               HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                                  Er RR+++N+++ +Lr+++P  +      K++Ka+i + A+ YI+sLq
  evm_27.model.AmTr_v1.0_scaffold00019.433  83 IVSERVRRKKLNDRLYQLRSVVPIiS------KMDKASIIKDAIAYIQSLQ 127
                                               467*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.05677126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-1779142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-1381131No hitNo description
SMARTSM003531.5E-1583132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1583143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-984127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTSNPMNTDE LYYDPFDQYL YDDLHSYQVF EGVFCHGGGG GYDEGLDLFS SESNSDQKGD  60
GQSSPDANTA TSAGTAAATA KNIVSERVRR KKLNDRLYQL RSVVPIISKM DKASIIKDAI  120
AYIQSLQQQE REILAEISQL ESQKCKNPSC LADRVDKPTE SRPIKKMRTD SIQAVHIAAP  180
TSNYPPRVTS LEILEMGEKT FVVRISCLKG RNAMANLFRA FESLKLRIIT ASTTAMHGHI  240
FKTVFVEY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011623894.10.0transcription factor bHLH35 isoform X2
TrEMBLW1PK310.0W1PK31_AMBTC; Uncharacterized protein
STRINGERN074650.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.32e-39bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]