PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00021.122
Common NameAMTR_s00021p00170620
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 204aa    MW: 22025.3 Da    PI: 8.8017
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.122genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.53.2e-09155189539
                                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                                               +r rr   NR +A+rsR RK+++i  Le+ v++L+
  evm_27.model.AmTr_v1.0_scaffold00021.122 155 RRVRRILANRQSAQRSRIRKLQYISDLERTVASLQ 189
                                               57899999************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579595.47E-9155191No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-9155189No hitNo description
PfamPF001701.8E-7155189IPR004827Basic-leucine zipper domain
CDDcd147031.23E-15156193No hitNo description
PROSITE patternPS000360158173IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MANRPSDAPP ASHNLLANHR APSAPAFTGT QVRAQQQPLW VDEFLEFSSA KRSSHRRVVS  60
DSMTAFTPSE ECSHAGFDGI DDEQLMAMFG GQQLQAEERS SNASTTPSSD RRSTGEQGAG  120
RTGASEAAEV QSAPRQEPPV FAGAGSAVEP NLDPRRVRRI LANRQSAQRS RIRKLQYISD  180
LERTVASLQV RSSCTASPRS LFT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020527795.11e-136basic leucine zipper 61 isoform X1
TrEMBLW1PZV71e-144W1PZV7_AMBTC; Uncharacterized protein
STRINGERN139831e-145(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.16e-32bZIP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]