PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00021.200
Common NameAMTR_s00021p00218190
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Nin-like
Protein Properties Length: 246aa    MW: 27643.2 Da    PI: 7.8309
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.200genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.93.5e-27108155552
                                    RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                               i+  +ls+yF++pi++AAkeL+v+lTvLK++CR++GI+RWPhRk+ksl
  evm_27.model.AmTr_v1.0_scaffold00021.200 108 ITYGELSSYFYMPITQAAKELKVGLTVLKKKCREFGIPRWPHRKMKSL 155
                                               78899*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.51891175IPR003035RWP-RK domain
PfamPF020428.6E-22108155IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGLAQGCSGE SGFARPKGFE NAFNGYYDNG YSDNNMGLSS DHPLGFLHEE FHDLQSTEVP  60
LIGDGSSSFD SCEGNGDKFC GSLVRERSLL YEEEEEGIRR VDKCSGYITY GELSSYFYMP  120
ITQAAKELKV GLTVLKKKCR EFGIPRWPHR KMKSLQSLIQ NVQELGKEDG DMGEENIRNA  180
IKILEEQRNL MEKMPGMQLA EKTKKLRQAC FKANYKRRRH LHSSSLSSSS SNPIFSIKLA  240
RSINL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855335.22e-96protein RKD1
TrEMBLW1Q0Q90.0W1Q0Q9_AMBTC; Uncharacterized protein
STRINGERN140610.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5671777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.15e-43RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]