PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00021.214
Common NameAMTR_s00021p00223240
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 230aa    MW: 24561.7 Da    PI: 6.2831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.214genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-1856106155
                                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                               + ++GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa a++ a+++l+g
  evm_27.model.AmTr_v1.0_scaffold00021.214  56 PVFRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPTAEMAAHAYDVAALNLKG 106
                                               579****887.**********843...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1256106IPR001471AP2/ERF domain
SMARTSM003804.0E-3557120IPR001471AP2/ERF domain
PROSITE profilePS5103224.13157114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-3257115IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2157115IPR016177DNA-binding domain
CDDcd000181.36E-2958116No hitNo description
PRINTSPR003672.1E-125869IPR001471AP2/ERF domain
PRINTSPR003672.1E-1296116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEEEPSSPYP QIRVSGSTPC RQKPAAEMTH CVETRPAEET PSRKIAAEKG GGTRHPVFRG  60
VRKRRWGKWV SEIREPRKKS RIWLGSFPTA EMAAHAYDVA ALNLKGRKAA LNFPENADTL  120
PRLATCSARD IQAAAAAAAA AAESCSEAEI SPKSEVSTAG TEDDFWGELP ALWKNGEIFS  180
APEISDFVSE FFGEGFISGI CGATEGDSAA QLVPPACCGL LRASSPPLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1749115673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852608.31e-166ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-41ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLW1Q1231e-164W1Q123_AMBTC; Uncharacterized protein
STRINGERN140751e-165(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-42ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]