PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00021.98

Common Name

AMTR_s00021p00146370, LOC18442207

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

bHLH

Protein Properties

Length: 152aa MW: 16992.6 Da PI: 10.4115

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.98	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.6	1.1e-08	71	112	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR+ri ++f L+ l+P K++ a++L A++Y+k+L+ evm_27.model.AmTr_v1.0_scaffold00021.98 71 ARHRRHRISKRFKILQGLVPGG-----SKMDTASMLDGAIRYVKYLK 112 699***************95.....5***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.322	62	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-13	67	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-11	68	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.72E-10	68	115	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-10	68	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-6	72	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MEYYFCSLNC CSHQQDQVLQ QMNPQYRHHD PSLPCRVRSS HRSLGSRPKQ PKWTPTKCRT 60 KLSVDPQSVA ARHRRHRISK RFKILQGLVP GGSKMDTASM LDGAIRYVKY LKAQIWLHHF 120 MESVGSVLGE EMGSSLGSGV GLSGLVRGAD V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006852492.1	1e-110	transcription factor HEC2
Swissprot	Q9M041	6e-25	BH140_ARATH; Transcription factor bHLH140
TrEMBL	W1Q0C6	1e-108	W1Q0C6_AMBTC; Uncharacterized protein
STRING	ERN13959	1e-109	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8941	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	7e-27	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00021.98
Entrez Gene	18442207

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]