PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.171
Common NameAMTR_s00022p00165560, LOC18439770
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 218aa    MW: 23217.6 Da    PI: 5.8511
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.171genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-0678100123
                                               EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                               y+C +Cg++Fs++  L  H++ H
  evm_27.model.AmTr_v1.0_scaffold00022.171  78 YSCAYCGRVFSTSQALGGHQNAH 100
                                               99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.25E-775105No hitNo description
Gene3DG3DSA:3.30.160.601.6E-576104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.5E-678102IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.67478105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MESLNSNPSD SLTVTSPHDH EPSYPTPDPP SCPTHNANTT PSTPRLEGLQ ADSNSHPQGI  60
GIGTDISVAS SPHQAKQYSC AYCGRVFSTS QALGGHQNAH KSERIAARKA VRNSVNAAQG  120
FQRIAPMPPN SSLRYVNPYL QTGTQQWYDA MAIEQGNSSE NGGAAGALPL MNSEIEYNGN  180
AMKMSASLPG QWRANEMVNP TLELASSEEP IDLTLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849991.11e-160zinc finger protein 6
TrEMBLW1PNG51e-159W1PNG5_AMBTC; Uncharacterized protein
STRINGERN115721e-160(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.16e-12C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]