PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.172
Common NameAMTR_s00022p00165870
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 238aa    MW: 26629.4 Da    PI: 10.2316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.172genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008683105123
                                               EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                               y+C +C+++F++   L  H+  H
  evm_27.model.AmTr_v1.0_scaffold00022.172  83 YPCLYCKQRFPSTQALGGHQTAH 105
                                               99**************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-580110No hitNo description
PROSITE profilePS501579.22483110IPR007087Zinc finger, C2H2
PfamPF139122.9E-683106IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MESENADISD SHSITTPHNP NQEPPRLELQ CLVTANPVRK SKPKPTNTTH IPEWLKPYML  60
HSISSSRDAA KRYATTSDPE NPYPCLYCKQ RFPSTQALGG HQTAHRNGRV VTRKAIKASS  120
NVRQKLQVRR KLQSLAPKPP HSSSLQANVY PNLHARLEQW PQSKYDQMML ATQSYNFRNG  180
GGVPSLPLMP SMFHTMGNNG QAMNMAVSLG QVKGQEMMDL NLKLVRTEEP IDLTLHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1PU321e-177W1PU32_AMBTC; Uncharacterized protein
STRINGERN115731e-178(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.12e-08C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]