PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.186
Common NameAMTR_s00022p00176280
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 240aa    MW: 26012 Da    PI: 6.5101
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.186genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA25.81.5e-08209228120
                                      GATA   1 CsnCgttkTplWRrgpdgnk 20 
                                               C+ C tt+TplWR+gp g+k
  evm_27.model.AmTr_v1.0_scaffold00022.186 209 CTTCETTSTPLWRNGPKGPK 228
                                               ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.658207226IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.1E-7207228IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEFYPLDSNS NSHETPSSNS TLLEIGQTWE NSGPFFQREL KEQDLLQKVG QYSGENVDSD  60
YVDCTLSLGS SPSMNFSQNP VAGGPPNHTF PATMDPKRIN VPAINVANYY YRMQVSQNYG  120
VAPYFNRWGS VPGNGNFVSW LPGLMSMEGR RGSFSGYGAP LMVDSGSPSI CRGLGNNMEN  180
KQQGMEALST ILLGGSRKGG GDGNLVRKCT TCETTSTPLW RNGPKGPKVY TLSLYAFSV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1PNI21e-176W1PNI2_AMBTC; Uncharacterized protein
STRINGERN115871e-176(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.12e-08GATA transcription factor 20
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]