PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.260
Common NameAMTR_s00022p00216890, LOC18439861
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family EIL
Protein Properties Length: 622aa    MW: 69268.6 Da    PI: 5.5454
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.260genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3429.43.5e-131404181352
                                               XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                                      EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcna 69 
                                               +el+krmwkd+++l+r+ker+k     ++  +++ k++++++qarrkkmsraQDgiLkYMlk mevc+a
  evm_27.model.AmTr_v1.0_scaffold00022.260  40 DELEKRMWKDRIKLQRIKERQKAAA--QQ--AEKPKQKQTSDQARRKKMSRAQDGILKYMLKLMEVCKA 104
                                               79********************854..33..58899********************************* PP

                                               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STT CS
                                      EIN3  70 qGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslse 138
                                               +GfvYgiipekgkpv+gasd++raWWkekv+fd+ngpaai+ky+a+n  +++++     ++   +sl++
  evm_27.model.AmTr_v1.0_scaffold00022.260 105 RGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAENFSAGKAD-----NKGGFNSLQD 168
                                               *********************************************999888555.....45899***** PP

                                               S-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHH CS
                                      EIN3 139 lqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkv 207
                                               lqDTtlgSLLs+lmqhcdppqr+fplekgv+pPWWP G+e+ww+elglsk   +ppy+kphdlkk+wkv
  evm_27.model.AmTr_v1.0_scaffold00022.260 169 LQDTTLGSLLSSLMQHCDPPQRKFPLEKGVAPPWWPLGNEEWWSELGLSKRLDPPPYRKPHDLKKVWKV 237
                                               ********************************************************************* PP

                                               HHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX........X CS
                                      EIN3 208 svLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss........s 266
                                               +vLtavikhmsp+i++i++++rqsk+lqdkm+akes ++l vln+ee  ++++s +  ss         
  evm_27.model.AmTr_v1.0_scaffold00022.260 238 GVLTAVIKHMSPNIAKIKKHVRQSKCLQDKMTAKESSIWLGVLNKEEGTIHQLSNEngSSgvsetgtpP 306
                                               *******************************************************96633677677663 PP

                                               XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.............................XXXX CS
                                      EIN3 267 lrkqspkvtlsceqkedvegkkeskikhvqavktta.............................gfpv 306
                                                 +++++  + +++++dv+g +++  + +++++ +a                               p 
  evm_27.model.AmTr_v1.0_scaffold00022.260 307 AFSERKEAEACSNSEYDVDGYEDEPCSVSSKDNGKAskddretclekgdsrenekrlhqefhakePSPQ 375
                                               3346777777778899***77777778888888777888888888888888888888888888776666 PP

                                               XXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXX CS
                                      EIN3 307 vrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqn 352
                                                 +rk+++++s+ v+++e     ++sq     ++++++d+n ++ +
  evm_27.model.AmTr_v1.0_scaffold00022.260 376 EARRKRPRTSSTPVNQHEP-LPLEESQDG--VPRNVIPDMNLMEAQ 418
                                               6777777788888777754.444444433..577777777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.6E-12640284No hitNo description
Gene3DG3DSA:1.10.3180.102.6E-69164292IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167689.94E-59165287IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MDQLAMIANE FGDGSDMEVD DIRVDNLAEN EVSDEEIEPD ELEKRMWKDR IKLQRIKERQ  60
KAAAQQAEKP KQKQTSDQAR RKKMSRAQDG ILKYMLKLME VCKARGFVYG IIPEKGKPVS  120
GASDNIRAWW KEKVKFDKNG PAAIAKYEAE NFSAGKADNK GGFNSLQDLQ DTTLGSLLSS  180
LMQHCDPPQR KFPLEKGVAP PWWPLGNEEW WSELGLSKRL DPPPYRKPHD LKKVWKVGVL  240
TAVIKHMSPN IAKIKKHVRQ SKCLQDKMTA KESSIWLGVL NKEEGTIHQL SNENGSSGVS  300
ETGTPPAFSE RKEAEACSNS EYDVDGYEDE PCSVSSKDNG KASKDDRETC LEKGDSRENE  360
KRLHQEFHAK EPSPQEARRK RPRTSSTPVN QHEPLPLEES QDGVPRNVIP DMNLMEAQPI  420
SVQPPPQNIQ LGSAPLPLED PTQLPHQLQD SQFHNVPGEF SGMASANIVA RSMSVKGQPL  480
LFAGAPNTSL HTKATFPAYD SSPGRYGFSH AQSQMQMVNG GHDLRQDGGE IRDENQVFGH  540
VLTLEGRTHE IVGDVNPLVK DAFHSEPDKL VESRFGSPMH DLSLVYGFHS PFDFGIGDTG  600
SLEAADLDFS LEDDLIQYFG A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A7e-6616629512140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00649PBMTransfer from LOC_Os09g31400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850080.10.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231161e-158EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLW1PVF30.0W1PVF3_AMBTC; Uncharacterized protein
STRINGERN116610.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-151ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  3. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  4. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  5. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]