PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.261
Common NameAMTR_s00022p00217850
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 486aa    MW: 53788.8 Da    PI: 8.1067
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.261genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.15.8e-11195235545
                                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                               k  rr+++NReAAr+sR+RKka++++Le    +L +  ++L
  evm_27.model.AmTr_v1.0_scaffold00022.261 195 KTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLNQLEHEL 235
                                               7789************************9777776665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-8190238No hitNo description
SMARTSM003387.2E-8191276IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.197193237IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.88E-7195237No hitNo description
CDDcd147084.17E-22195247No hitNo description
PfamPF001703.9E-8195235IPR004827Basic-leucine zipper domain
PROSITE patternPS000360198213IPR004827Basic-leucine zipper domain
PfamPF141446.2E-31285359IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MASDKGTARS IQRLEVQGGG SYASTIPAGF LAKESNSSSG AYDLGELDQA LFLYLEGHNT  60
HPSVADQRHC TEIRPPTLNI FPSQPMHVDP LLKGVGLGSS SGDRNNNTNN SNNSSSSNIQ  120
LGFDSPTSSS GVSNKRSSSE QQHQQQSTMM MELANPRTDL TSKPPEPDKV SKRESIRKGA  180
ASSSEHEGPK TPDPKTLRRL AQNREAARKS RLRKKAYVQQ LESSRMKLNQ LEHELQRARA  240
QGMFFGGSGM LGDQSLPCGS GNLSTEAAVF DMEYGRWLEE HHRLMCELRA AVSEHLPESE  300
LRLYVDNCLG HYEEMMGLKS MVARADVFHL VSGIWKTPAE RCFLWMGGFR PSDLLKMLVP  360
QIEPLTEQQF LAMCSLQQSS QQAEDALTQG IEALHKSLSE TIASGSLTTP TIMANYMGQM  420
ALAMNKLANL EGFVRQADNL RHQTLQQLHR ILTTRQAARC FLAIGEYFHR LRALSSLWLA  480
RPKQE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020526256.10.0bZIP transcription factor TGA10 isoform X1
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLW1PNT90.0W1PNT9_AMBTC; Uncharacterized protein
STRINGERN116620.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP75161218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-148bZIP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]