PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.74
Common NameAMTR_s00022p00094930, LOC18439673
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 614aa    MW: 68399.3 Da    PI: 4.5499
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.74genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.6e-5361341129
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkky 68 
                                              lppGfrFhPtdeelv +yLk+++ g++++l +vi+++diyk+ePwdLp k  ++++++ewyfFs++d+ky
  evm_27.model.AmTr_v1.0_scaffold00022.74   6 LPPGFRFHPTDEELVLFYLKRRICGRPVPL-DVIADIDIYKCEPWDLPdKsLLQSRDREWYFFSPKDRKY 74 
                                              79****************************.99**************96446778999************ PP

                                      NAM  69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                              ++g r nrat++gyWkatgkd+ ++s ++++vg+kktL+++ grap+ge+tdWvmheyrle
  evm_27.model.AmTr_v1.0_scaffold00022.74  75 PKGVRINRATQAGYWKATGKDRCICS-NSHTVGIKKTLIYHMGRAPRGERTDWVMHEYRLE 134
                                              **************************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-644156IPR003441NAC domain
PROSITE profilePS5100560.0716156IPR003441NAC domain
PfamPF023654.5E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MGPVSLPPGF RFHPTDEELV LFYLKRRICG RPVPLDVIAD IDIYKCEPWD LPDKSLLQSR  60
DREWYFFSPK DRKYPKGVRI NRATQAGYWK ATGKDRCICS NSHTVGIKKT LIYHMGRAPR  120
GERTDWVMHE YRLEDDELKK DNIAQDSYAL CKVYRKSGPG PKNGEQYGAP FKEEEWSEEA  180
NDERLEGLMD GAGACLKEQI TPEVTVRGSS DSFENLLCHV PDQTTPVEPP SDPDQGAKDL  240
DHILRCILGD DEEDKQYLQD HANGSKVVGE DESHGHVVDP SGNEDWLLCD LRDGTETSFQ  300
SEHSVPGPCQ PSQYPVATEV QGFEPDIQIH DEDFLEIRDL IDPEYPEPSI PVQQFNITEN  360
PYPPLDGLND LDLYFDPSLL LHEVGNPDNS HWTTPLVNQI DPQNVQFNGS NLENQLDFYP  420
PSSFVNEYRE PATNLGCDLW DGELEQHQVL DSSRLSVFAS TELSQQMVMD PPSSGIVYNS  480
GSSINPSGGM VVVQGGGGGS SSWIMSRVSN MLESVPALNA SAAEHPLIEK AIKRMSSFGG  540
RASTPSQHAS CSSSSKCSEC GGRALGGRRR EERASGGLVF VFSLGAMWAA LWVLLIAVFV  600
KFLKVLFDRF LRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-53416215171NO APICAL MERISTEM PROTEIN
1ut4_B4e-53416215171NO APICAL MERISTEM PROTEIN
1ut7_A4e-53416215171NO APICAL MERISTEM PROTEIN
1ut7_B4e-53416215171NO APICAL MERISTEM PROTEIN
3swm_A4e-53416218174NAC domain-containing protein 19
3swm_B4e-53416218174NAC domain-containing protein 19
3swm_C4e-53416218174NAC domain-containing protein 19
3swm_D4e-53416218174NAC domain-containing protein 19
3swp_A4e-53416218174NAC domain-containing protein 19
3swp_B4e-53416218174NAC domain-containing protein 19
3swp_C4e-53416218174NAC domain-containing protein 19
3swp_D4e-53416218174NAC domain-containing protein 19
4dul_A4e-53416215171NAC domain-containing protein 19
4dul_B4e-53416215171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849894.10.0NAC domain-containing protein 82
TrEMBLW1PVZ70.0W1PVZ7_AMBTC; Uncharacterized protein
STRINGERN114750.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9932711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-83NAC domain containing protein 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]