PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.95
Common NameAMTR_s00022p00106940, LOC18439694
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SBP
Protein Properties Length: 1109aa    MW: 122964 Da    PI: 7.8106
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.95genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.51.2e-40167244178
                                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT--- CS
                                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhn 70 
                                              +Cqv++C+adls ak+yhrrhkvCevhsk++++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn
  evm_27.model.AmTr_v1.0_scaffold00022.95 167 MCQVDDCRADLSGAKDYHRRHKVCEVHSKTTKALVGKQMQRFCQQCSRFHPLQEFDEGKRSCRRRLAGHN 236
                                              6********************************************************************* PP

                                              ----S--- CS
                                      SBP  71 errrkkqa 78 
                                              +rrrk+q+
  evm_27.model.AmTr_v1.0_scaffold00022.95 237 RRRRKTQP 244
                                              *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.6E-34161229IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.872165242IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-37166246IPR004333Transcription factor, SBP-box
PfamPF031102.0E-29168241IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.201.7E-5490524IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-6863999IPR020683Ankyrin repeat-containing domain
CDDcd002044.01E-78701002No hitNo description
Gene3DG3DSA:1.25.40.201.7E-5905998IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.89431025IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1109 aa     Download sequence    Send to blast
MEGEAVAQVA TPLFMHQALP GRFCEPSAMT KKREASWVNP SWHNHHQQNQ QQYNSKATWN  60
PKVWDWDSVM FVAKPKEISV DLQSGAEGSR LGGESEQRLK GDETLKQQKL NSEETLKPIA  120
FKRNDMEDAE NLTLKLGGSN YSAVEDTSAR PSKRVRSGSP GSSSYPMCQV DDCRADLSGA  180
KDYHRRHKVC EVHSKTTKAL VGKQMQRFCQ QCSRFHPLQE FDEGKRSCRR RLAGHNRRRR  240
KTQPDDVSSR LLLSANQDNG SPANLDIVNL LNVIARLQGV NADKTINGQP LPDKDRLIQI  300
LSKINSTPAS ESSGASLAVP EGFDLNVSQT LHSMEHPLKP NGNQSPPSTT DLFAVLSAAL  360
GTSSSDGLAV LSRGLNNHST DYKVQQQPHL ATKLNAQEQA VRSDIQKTPG FPFPSSGLER  420
SNILPSQGKG YDNNVEVSRQ GLSLQLFSSS PEDDSPSKLG STRKYFSSDS SNPMEDRSPS  480
SSPPIVRKLF PLHSAAENMK QERISICREE NMVLDASPSH GSSSALELFK SPNGKAENGS  540
HSNLPYQGME ARSAVFQAGY SSSSGSDQSP SSSNSDSQER TERIIFKLFD KNPSNFPGKL  600
GTKILEWLSH SPSEMESYIR PGCVVLSVYI SMSATAWEEL QEGLMQRIRL LVEDSTTDFW  660
RSGRFLVQTD RQLASHKDGK IRLCKSWRTW STPQLVLVSP LAVEGGRDTQ LVLRGHNLTL  720
PDTKIHCAHM GKYITKDVLK DSSVAVYDEL DSETFNFPGD GVPNVMGRFF IEVENGFKGN  780
SFPVIIAEAS VCTELRTLEP DFEEDLRTVN GDDSTCDIGC PRSREDALHF LNELGWLFQR  840
KNTPSRFIDI RFSSTRFKFL FVFSVERDWL ALVKTLLDIF VDENLGTDGN LTRESSELLS  900
EIHLLNRAVK RKCRKMVDLL LCYSLCRGGP KKLLFTPNLA GPGGLTPLHL AACTQNSEDL  960
VDALTSDPLE VGLKFWNTVT DANGQTPYAY ALMRNNNHYN RLVGRKLAER NGHVSLTVME  1020
SVAPLEPSSI LSKSTSLQPR SCANCVAMEA SGRRYRMPRS HGLLHRPYVH SMLAIAAVCV  1080
CVCLFLRCPP DIGSVAPFKW ETIDFGSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-33158241184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849915.10.0squamosa promoter-binding-like protein 14
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLW1PUW00.0W1PUW0_AMBTC; Uncharacterized protein
STRINGERN114960.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP71381115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]