PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00023.118
Common NameAMTR_s00023p00181320, LOC18423566
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WOX
Protein Properties Length: 164aa    MW: 18897.7 Da    PI: 9.8656
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00023.118genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-19766357
                                              --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                                  Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                              +R+++t+eql +Lee+++   r+p+a ++++++++l    +++ ++V++WFqN++a++++
  evm_27.model.AmTr_v1.0_scaffold00023.118  7 TRWCPTAEQLMILEEMYRGgIRTPNALQIQHITTHLsyygKIEGKNVFYWFQNHKARDRQ 66
                                              8*****************99*************************************996 PP
2Wus_type_Homeobox117.84.9e-38567264
                         Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                                              ++tRW+Pt+eQ++iLee+y+ G+rtPn+ +iq+it++L+ yGkie+kNVfyWFQN+kaR+rqk
  evm_27.model.AmTr_v1.0_scaffold00023.118  5 VSTRWCPTAEQLMILEEMYRGGIRTPNALQIQHITTHLSYYGKIEGKNVFYWFQNHKARDRQK 67
                                              589***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.394267IPR001356Homeobox domain
SMARTSM003890.0018471IPR001356Homeobox domain
SuperFamilySSF466896.42E-11767IPR009057Homeodomain-like
PfamPF000463.4E-17766IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-6866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MPQAVSTRWC PTAEQLMILE EMYRGGIRTP NALQIQHITT HLSYYGKIEG KNVFYWFQNH  60
KARDRQKLRR KMIKQQQQLP TPQHEAASFS LTQIPPRFYE EQCRSIGFMC MLPKPEVEAP  120
TAQMDSAPRY RALETLDLFP VRSTGIKEEK PRSTALHVST SSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671KLRRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM8821423e-69FM882142.1 Amborella trichopoda partial wox3 gene for putative wuschel homeobox protein WOX3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828230.11e-120WUSCHEL-related homeobox 3
TrEMBLW1NJL11e-119W1NJL1_AMBTC; Uncharacterized protein
STRINGERM956461e-120(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP55801121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.15e-41WOX family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]