PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00024.151
Common NameAMTR_s00024p00186840
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 263aa    MW: 28816.7 Da    PI: 7.909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.151genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-0596118123
                                               EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                               ++C++C + F+++  L  H++ H
  evm_27.model.AmTr_v1.0_scaffold00024.151  96 FECHYCFRNFPTSQALGGHQNAH 118
                                               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.11E-692123No hitNo description
PROSITE profilePS5015710.9996123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0010091Biological Processtrichome branching
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEEEPNTLLL SSHSNSTSHE MPPSVDSFSQ LPFIRSTPPQ PLPHDPKAPT LETRPIKLFG  60
IEFNQKSQNS GENSSQNSVE EEETKEQNTP TTGRKFECHY CFRNFPTSQA LGGHQNAHKR  120
ERQQAKRVHL HSAMASHHPG LVNFHHRLAP PLSLSNNRSF LSTFNGFNGL TGSPVLQNGG  180
FSQPINGTPA WRSLGVQSHG GYGGHGFSVQ SSSNVIPLPL FGVEEKKRDS MVNRSWSESS  240
SSSSSSSSTT KVHDQISLDL HL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849571.20.0zinc finger protein GIS
TrEMBLW1PMB10.0W1PMB1_AMBTC; Uncharacterized protein
STRINGERN111520.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP285958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.11e-22zinc finger protein 8
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]