PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00024.166

Common Name

AMTR_s00024p00195160

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

NF-YA

Protein Properties

Length: 236aa MW: 26218.3 Da PI: 8.7076

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.166	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.9	6.9e-33	86	142	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy+rIl+RRq Rakle+++kl k+rkpylheSRh hA++R+Rg+gGrF evm_27.model.AmTr_v1.0_scaffold00024.166 86 DEPVYVNAKQYRRILRRRQLRAKLESQDKL-VKTRKPYLHESRHLHAMKRARGTGGRF 142 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.7E-37	84	145	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.59	85	145	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.5E-27	87	142	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.9E-24	88	110	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	90	110	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.9E-24	119	142	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MASYDENDGK GVESHVKSLL SLGTSEGVFP HAQIEYGHPI TRMSYPYADP YFSGVVAAYG 60 TQAVIHPQMF GLQHTRMPLP IEFMEDEPVY VNAKQYRRIL RRRQLRAKLE SQDKLVKTRK 120 PYLHESRHLH AMKRARGTGG RFLNTKNLEE SKATVDGQKG SEGGALLQLG SLSESEVLQS 180 ENNNPSSGGP TTSGSEATSF SHPEGFYDPQ EFRLNGFHLH NASYGGPHHM FSVIR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-21	86	147	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011625285.1	1e-173	nuclear transcription factor Y subunit A-3
Refseq	XP_020526141.1	1e-173	nuclear transcription factor Y subunit A-3
TrEMBL	W1PME3	1e-173	W1PME3_AMBTC; Uncharacterized protein
STRING	ERN11167	1e-174	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	2e-39	nuclear factor Y, subunit A5

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00024.166

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]